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descriptionVirEvoDyn simulates viral evolutionary dynamics with a full fitness landscape.
ownerwww-data
last changeThu, 3 Jan 2019 03:03:16 +0000 (22:03 -0500)
shortlog
2019-01-03 Dariusz MurakowskiRelease under GNU AGPLv3 or later master commit | commitdiff | tree | snapshot
2015-07-27 Dariusz MurakowskiAdd options for separate inverse temperature (beta... nonMC_send commit | commitdiff | tree | snapshot
2015-07-21 Dariusz MurakowskiAdd option to initialize state completely randomly. commit | commitdiff | tree | snapshot
2015-07-16 Dariusz MurakowskiUniform random integer generation (by rejection sampling). commit | commitdiff | tree | snapshot
2015-07-16 Dariusz MurakowskiClean up trailing ^M characters. commit | commitdiff | tree | snapshot
2015-07-16 Dariusz MurakowskiOptionally track relative contribution to energy from... commit | commitdiff | tree | snapshot
2015-07-16 Dariusz MurakowskiClose file handles only when opened. Add make flag... commit | commitdiff | tree | snapshot
2015-07-06 Dariusz MurakowskiAdd `make` rule for MC code. commit | commitdiff | tree | snapshot
2015-07-06 Dariusz MurakowskiCode for doing Potts Monte Carlo (optionally with fixed... commit | commitdiff | tree | snapshot
2015-06-26 Dariusz Murakowski(minor) Don't build old Monte Carlo code. Print to... commit | commitdiff | tree | snapshot
2015-06-26 Dariusz MurakowskiAdd secret help option (--help-rates) to show meaning... commit | commitdiff | tree | snapshot
2015-06-26 Dariusz MurakowskiAdd command-line option/flag to flush each output line... commit | commitdiff | tree | snapshot
2015-06-26 Dariusz MurakowskiCounter (dummy species) for viruses that have escaped... commit | commitdiff | tree | snapshot
2015-06-26 Dariusz MurakowskiOnly add reactions with non-zero rate constants. commit | commitdiff | tree | snapshot
2015-06-26 Dariusz MurakowskiDocument goto/come-from(-like) behavior. Clean up junk... commit | commitdiff | tree | snapshot
2015-06-25 Dariusz MurakowskiCheck number of inserted sites. Use unsigned int instea... commit | commitdiff | tree | snapshot
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heads
6 years ago master shortlog | log | tree
9 years ago nonMC_send shortlog | log | tree
10 years ago tmp shortlog | log | tree
10 years ago wf_send shortlog | log | tree
10 years ago ss_send shortlog | log | tree
VirEvoDyn simulates viral evolutionary dynamics with a full fitness landscape.