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VirEvoDyn.git
2014-08-20 Dariusz MurakowskiSTL compliant sorted vector class (std::map replacement... commit | commitdiff | tree | snapshot
2014-04-26 Dariusz MurakowskiCommand line parameter for bonus/penalty applied to... commit | commitdiff | tree | snapshot
2014-04-17 Dariusz MurakowskiPrint supplementary output file (*.sum) with CSV sequence. commit | commitdiff | tree | snapshot
2014-04-17 Dariusz MurakowskiDetect when escape from *all* epitopes (vs *any* immune... commit | commitdiff | tree | snapshot
2014-04-17 Dariusz MurakowskiGSL {headers,libraries} on lc2 are in default search... commit | commitdiff | tree | snapshot
2014-04-17 Dariusz MurakowskiAllow calculating energy without including epitope... commit | commitdiff | tree | snapshot
2014-04-11 Dariusz MurakowskiUpdate unit tests. Add new one with simple two-site... commit | commitdiff | tree | snapshot
2014-04-11 Dariusz MurakowskiPrint sequence as CSV (comma-separated). commit | commitdiff | tree | snapshot
2014-04-10 Dariusz MurakowskiUpdate unit tests. commit | commitdiff | tree | snapshot
2014-03-20 Dariusz MurakowskiSpread total immune pressure strength uniformly over... commit | commitdiff | tree | snapshot
2014-03-13 Dariusz MurakowskiStart of Monte Carlo (static epitope calculation),... commit | commitdiff | tree | snapshot
2014-03-13 Dariusz MurakowskiDon't fflush population-writing each time. commit | commitdiff | tree | snapshot
2014-03-06 Dariusz MurakowskiPrint generation number on each line. (Need to update... commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiTest all one- and two-epitope cases of WT/mut site... commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiMore comprehensive test framework. commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiCorrectly parse multiple epitopes per file (using C... commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiUnit test for multiple-epitope input file. commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiMultiple epitopes; one per line in .ep file. All have... commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiUse '|' as epitope mut/WT field list separator (on... commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiUpdate unit tests for separate .st and .ep files. commit | commitdiff | tree | snapshot
2014-02-17 Dariusz MurakowskiRead population state and epitopes from separate files. commit | commitdiff | tree | snapshot
2014-02-13 Dariusz MurakowskiExtra output and tests for debugging. commit | commitdiff | tree | snapshot
2014-02-13 Dariusz MurakowskiStart framework for targeting multiple epitopes. commit | commitdiff | tree | snapshot
2014-02-04 Dariusz MurakowskiBasic unit testing framework. commit | commitdiff | tree | snapshot
2014-02-04 Dariusz MurakowskiCheck for file-opening / existence errors (vs segfault... commit | commitdiff | tree | snapshot
2013-09-26 Dariusz MurakowskiAdd write_mod option to write population at regular... commit | commitdiff | tree | snapshot
2013-09-16 Dariusz MurakowskiLocate segfault for small N (population size = 0).... commit | commitdiff | tree | snapshot
2013-05-17 Dariusz MurakowskiSpecial two-site + two-allele (two-locus + binary)... commit | commitdiff | tree | snapshot
2013-05-15 Dariusz MurakowskiMore output for non-epitope runs. Assuage compiler... commit | commitdiff | tree | snapshot
2013-05-14 Dariusz MurakowskiWright-Fisher code by Tom Butler (via John Barton). commit | commitdiff | tree | snapshot
2013-05-14 Dariusz MurakowskiJust use the GNU Scientific Library (GSL) for RNG.... commit | commitdiff | tree | snapshot
2013-04-05 Dariusz MurakowskiAdd Mersenne Twister RNG library/header. Generalize... commit | commitdiff | tree | snapshot
2013-04-05 Dariusz MurakowskiPrint mutset_t (to stream using operator<<) as CSV... commit | commitdiff | tree | snapshot
2013-04-05 Dariusz MurakowskiStart of Wright-Fisher dynamics using STL. Mutations... commit | commitdiff | tree | snapshot
VirEvoDyn simulates viral evolutionary dynamics with a full fitness landscape.