From ef34cba2f51c149ae6ea3c2f9907b59a234d3449 Mon Sep 17 00:00:00 2001
From: Dariusz Murakowski <murakdar@mit.edu>
Date: Thu, 20 Mar 2014 18:51:12 -0400
Subject: [PATCH] Spread total immune pressure strength uniformly over targeted
 epitopes.

---
 wf.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/wf.cpp b/wf.cpp
index 30a9364..0064dea 100644
--- a/wf.cpp
+++ b/wf.cpp
@@ -100,7 +100,7 @@ void run(RunParameters &r, unsigned seed) {
             
                 EpitopeHamiltonian H(r.couplingsInfile);
                 for (unsigned ep=0; ep<r.numEpitopes; ++ep)
-                    H.set_epitope(r.eWT[ep], r.eMut[ep], r.penalty);
+                    H.set_epitope(r.eWT[ep], r.eMut[ep], r.penalty/(double)r.numEpitopes);
                 H.set_temp(r.bh, r.bJ);
                 Population P(H, r.n, r.mu, r.initPop, r.initFrac);
 
-- 
2.7.4