From 82680d19cde56ab8832671b6da9192de25d0daaf Mon Sep 17 00:00:00 2001
From: Dariusz Murakowski <murakdar@mit.edu>
Date: Fri, 24 Apr 2015 04:07:14 -0400
Subject: [PATCH] Fix the build: delete all the temporary testing stuff.

---
 ss.cpp | 38 --------------------------------------
 1 file changed, 38 deletions(-)

diff --git a/ss.cpp b/ss.cpp
index 5b4ec36..35396f5 100644
--- a/ss.cpp
+++ b/ss.cpp
@@ -489,44 +489,6 @@ void usage()
 
 int main(int argc, char *argv[]) {
 
-///*
-    std::string fname = argv[1];
-    std::string fname2 = argv[2];
-    PottsHamiltonian H(fname,fname2);
-    for (unsigned i=0; i<H.J.size(); i++) {
-        for (unsigned j=0; j<H.J[i].size(); j++) {
-            std::cout << H.J[i][j] << ' ';
-        }
-        std::cout << '\n';
-    }
-    for (unsigned i=0; i<H.aa2state.size(); i++) {
-        for (int aa=aa_BEGIN; aa != aa_END; ++aa) {
-            printf("%c(%d) ", int2aa.at(aa),H.aa2state[i][aa]);
-            //std::cout << H.aa2state[i][aa] << ' ';
-        }
-        std::cout << '\n';
-    }
-    //NTVirus v("TTT");
-    NTVirus v(H,argv[3]);
-    //std::cout << int2aa.at(codon2aa.at(str2codon.at(v.nt_seq))) << '\n';
-    std::cout << aa2str.at(v.aa_seq[0]) << '\n';
-    std::cout << aaseq2str(v.aa_seq) << '\n';
-    for (size_t i=0; i<v.L_aa; i++) {
-        std::cout << v.config[i] << ' ';
-    }
-    std::cout << '\n';
-    printf("Nnt=%d Naa=%d E=%f\n",v.L_nt,v.L_aa,v.energy);
-    CTLaaSpecies *T = new CTLaaSpecies;
-    T->epitopes.push_back(AARecognizer(argv[4],0));
-    T->affinity.push_back(1.0);
-    T->num_ep = 1;
-    if (T->recognized(v) > 0.0)
-        std::cout << "got 'im!\n";
-    else
-        std::cout << "escaped :(\n";
-    return 0;
-//*/
-
     RunParameters_SS r;
 
     unsigned seed = sim_random_seed();
-- 
2.7.4