Rename and depersonalize LANL HIV scripts

diff --git a/HIValign- automatic e-mail address.user.js b/HIValign- automatic e-mail address.user.js
deleted file mode 100644 (file)
index 9a5f2e7..0000000
--- a/HIValign- automatic e-mail address.user.js
+++ /dev/null
@@ -1,32 +0,0 @@
-// ==UserScript==
-// @name         HIValign: automatic e-mail address
-// @namespace    http://dariusz.murakowski.org
-// @version      0.1
-// @description  also focuses on "(optional) title" input field
-// @author       Dariusz Murakowski
-// @copyright    2018+, Dariusz Murakowski
-// @license      AGPL-3.0-or-later
-// @match        https://www.hiv.lanl.gov/cgi-bin/VIRALIGN/viralign.cgi
-// @grant        none
-// @run-at       document-end
-// ==/UserScript==
-
-(function() {
-    'use strict';
-
-    function get0(s) {
-        var sel = document.querySelectorAll(s);
-        if (sel.length == 1) {
-            var out = sel[0];
-            console.log(out);
-            return out;
-        }
-    }
-
-    if (document.title == 'HIValign') {
-        var address = 'murakdar@mit.edu';
-        get0('input[name=EMAIL]').value = address;
-        get0('input[name=EMAIL2]').value = address;
-        get0('input[name=titleFromUser]').focus();
-    }
-})();

diff --git a/LANL HIV results page- set alt+S keyboard shortcut to improve download options.user.js b/LANL HIV results page- set alt+S keyboard shortcut to improve download options.user.js
new file mode 100644 (file)
index 0000000..704894d
--- /dev/null
+++ b/LANL HIV results page- set alt+S keyboard shortcut to improve download options.user.js
@@ -0,0 +1,47 @@
+// ==UserScript==
+// @name         LANL HIV results page: set alt+S keyboard shortcut to improve download options
+// @namespace    http://dariusz.murakowski.org
+// @version      0.2
+// @description  add alt+S shortcut to include HXB2 seq and label with accession code and patient ID
+// @author       Dariusz Murakowski
+// @copyright    2018+, Dariusz Murakowski
+// @license      AGPL-3.0-or-later
+// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.comp
+// @grant        none
+// @run-at       document-end
+// ==/UserScript==
+
+(function() {
+    'use strict';
+
+    function get0(s) {
+        var sel = document.querySelectorAll(s);
+        if (sel.length == 1) {
+            var out = sel[0];
+            console.log(out);
+            return out;
+        }
+    }
+
+    function doStuff() {
+        // onclick="showElt('both'); hideElt('tree'); hideElt('down'); showElt('save')"
+        get0('input[value="Download Sequences"]').click();
+
+        // simulate clicking the "compose a label" link
+        Changesaveoutput();showElt('compose');
+
+        // set options
+        get0('input[name=INCLUDE_HXB2]').checked = true;
+        get0('input[name=comp_sa_genbankaccession]').value = 5;
+        get0('input[name=comp_ssam_pat_id]').value = 6;
+    }
+
+    // https://superuser.com/questions/496212/shortcut-to-open-specific-bookmark-url-in-chrome/1313997#1313997
+    document.addEventListener('keyup', function(event) {
+        if (!event.ctrlKey && event.altKey && !event.shiftKey) {
+            if ('S' == String.fromCharCode(event.keyCode)) {
+                doStuff();
+            }
+        }
+    });
+})();

diff --git a/LANL HIV search- set e-mail field.user.js b/LANL HIV search- set e-mail field.user.js
new file mode 100644 (file)
index 0000000..ad7cd49
--- /dev/null
+++ b/LANL HIV search- set e-mail field.user.js
@@ -0,0 +1,30 @@
+// ==UserScript==
+// @name         LANL HIV search: set e-mail field
+// @namespace    http://dariusz.murakowski.org
+// @version      0.2
+// @description  only sets e-mail field when title matches "Mail-back submission form "
+// @author       Dariusz Murakowski
+// @copyright    2018+, Dariusz Murakowski
+// @license      AGPL-3.0-or-later
+// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.comp
+// @grant        none
+// @run-at       document-end
+// ==/UserScript==
+
+(function() {
+    'use strict';
+
+    function get0(s) {
+        var sel = document.querySelectorAll(s);
+        if (sel.length == 1) {
+            var out = sel[0];
+            console.log(out);
+            return out;
+        }
+    }
+
+    if (document.title.startsWith('Mail-back submission form ')) {
+        get0('input[name=email]').value = 'you@EDIT_ME_BEFORE_USE@example.com';
+        get0('input[name=job_title]').focus();
+    }
+})();

diff --git a/LANL HIV sequence search- nicer formatting.user.js b/LANL HIV sequence search- nicer formatting.user.js
new file mode 100644 (file)
index 0000000..9388d55
--- /dev/null
+++ b/LANL HIV sequence search- nicer formatting.user.js
@@ -0,0 +1,49 @@
+// ==UserScript==
+// @name         LANL HIV sequence search: nicer formatting
+// @namespace    http://dariusz.murakowski.org
+// @version      0.2
+// @description  expand size of "subtype" box; add B and C keyboard shortcuts to select those clades
+// @author       Dariusz Murakowski
+// @copyright    2018+, Dariusz Murakowski
+// @license      AGPL-3.0-or-later
+// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html
+// @grant        none
+// @run-at       document-end
+// ==/UserScript==
+
+(function() {
+    'use strict';
+
+    function get0(s) {
+        var sel = document.querySelectorAll(s);
+        if (sel.length == 1) {
+            var out = sel[0];
+            console.log(out);
+            return out;
+        }
+    }
+
+    var subtype_box = get0('select.si_pulldown[name=slave]');
+    subtype_box.setAttribute("size","10");  // default size=6
+
+    // https://superuser.com/questions/496212/shortcut-to-open-specific-bookmark-url-in-chrome/1313997#1313997
+    var kb = {}, option;
+    kb['B'] = "B* or Bstar";
+    kb['C'] = "C* or Cstar";
+    document.addEventListener('keyup', function(event) {
+        if (!event.ctrlKey && !event.altKey && event.shiftKey) {
+            if (option = kb[String.fromCharCode(event.keyCode)]) {
+                console.log(subtype_box);
+                subtype_box.value = option;
+            }
+        }
+    });
+
+    var region_box = get0('select.si_pulldown[name="Genomic Region"]');
+    region_box.setAttribute("size","10");  // default size=7
+
+    // click the "More sequence information" button
+//    var more = document.getElementById('extra_sequence_information_img');
+//    console.log(more);
+//    more.click();
+})();

diff --git a/LANL HIValign- automatic e-mail address.user.js b/LANL HIValign- automatic e-mail address.user.js
new file mode 100644 (file)
index 0000000..5e61097
--- /dev/null
+++ b/LANL HIValign- automatic e-mail address.user.js
@@ -0,0 +1,32 @@
+// ==UserScript==
+// @name         LANL HIValign: automatic e-mail address
+// @namespace    http://dariusz.murakowski.org
+// @version      0.2
+// @description  also focuses on "(optional) title" input field
+// @author       Dariusz Murakowski
+// @copyright    2018+, Dariusz Murakowski
+// @license      AGPL-3.0-or-later
+// @match        https://www.hiv.lanl.gov/cgi-bin/VIRALIGN/viralign.cgi
+// @grant        none
+// @run-at       document-end
+// ==/UserScript==
+
+(function() {
+    'use strict';
+
+    function get0(s) {
+        var sel = document.querySelectorAll(s);
+        if (sel.length == 1) {
+            var out = sel[0];
+            console.log(out);
+            return out;
+        }
+    }
+
+    if (document.title == 'HIValign') {
+        var address = 'you@EDIT_ME_BEFORE_USE@example.com';
+        get0('input[name=EMAIL]').value = address;
+        get0('input[name=EMAIL2]').value = address;
+        get0('input[name=titleFromUser]').focus();
+    }
+})();

diff --git a/nicer formatting for HIV LANL sequence search.user.js b/nicer formatting for HIV LANL sequence search.user.js
deleted file mode 100644 (file)
index 8648695..0000000
--- a/nicer formatting for HIV LANL sequence search.user.js
+++ /dev/null
@@ -1,49 +0,0 @@
-// ==UserScript==
-// @name         nicer formatting for HIV LANL sequence search
-// @namespace    http://dariusz.murakowski.org
-// @version      0.1
-// @description  expand size of "subtype" box
-// @author       Dariusz Murakowski
-// @copyright    2018+, Dariusz Murakowski
-// @license      AGPL-3.0-or-later
-// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.html
-// @grant        none
-// @run-at       document-end
-// ==/UserScript==
-
-(function() {
-    'use strict';
-
-    function get0(s) {
-        var sel = document.querySelectorAll(s);
-        if (sel.length == 1) {
-            var out = sel[0];
-            console.log(out);
-            return out;
-        }
-    }
-
-    var subtype_box = get0('select.si_pulldown[name=slave]');
-    subtype_box.setAttribute("size","10");  // default size=6
-
-    // https://superuser.com/questions/496212/shortcut-to-open-specific-bookmark-url-in-chrome/1313997#1313997
-    var kb = {}, option;
-    kb['B'] = "B* or Bstar";
-    kb['C'] = "C* or Cstar";
-    document.addEventListener('keyup', function(event) {
-        if (!event.ctrlKey && !event.altKey && event.shiftKey) {
-            if (option = kb[String.fromCharCode(event.keyCode)]) {
-                console.log(subtype_box);
-                subtype_box.value = option;
-            }
-        }
-    });
-
-    var region_box = get0('select.si_pulldown[name="Genomic Region"]');
-    region_box.setAttribute("size","10");  // default size=7
-
-    // click the "More sequence information" button
-//    var more = document.getElementById('extra_sequence_information_img');
-//    console.log(more);
-//    more.click();
-})();

diff --git a/set alt+S keyboard shortcut on HIV LANL results page to improve download options.user.js b/set alt+S keyboard shortcut on HIV LANL results page to improve download options.user.js
deleted file mode 100644 (file)
index ab44451..0000000
--- a/set alt+S keyboard shortcut on HIV LANL results page to improve download options.user.js
+++ /dev/null
@@ -1,47 +0,0 @@
-// ==UserScript==
-// @name         set alt+S keyboard shortcut on HIV LANL results page to improve download options
-// @namespace    http://dariusz.murakowski.org
-// @version      0.1
-// @description  add alt+S shortcut to include HXB2 seq and label with accession code and patient ID
-// @author       Dariusz Murakowski
-// @copyright    2018+, Dariusz Murakowski
-// @license      AGPL-3.0-or-later
-// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.comp
-// @grant        none
-// @run-at       document-end
-// ==/UserScript==
-
-(function() {
-    'use strict';
-
-    function get0(s) {
-        var sel = document.querySelectorAll(s);
-        if (sel.length == 1) {
-            var out = sel[0];
-            console.log(out);
-            return out;
-        }
-    }
-
-    function doStuff() {
-        // onclick="showElt('both'); hideElt('tree'); hideElt('down'); showElt('save')"
-        get0('input[value="Download Sequences"]').click();
-
-        // simulate clicking the "compose a label" link
-        Changesaveoutput();showElt('compose');
-
-        // set options
-        get0('input[name=INCLUDE_HXB2]').checked = true;
-        get0('input[name=comp_sa_genbankaccession]').value = 5;
-        get0('input[name=comp_ssam_pat_id]').value = 6;
-    }
-
-    // https://superuser.com/questions/496212/shortcut-to-open-specific-bookmark-url-in-chrome/1313997#1313997
-    document.addEventListener('keyup', function(event) {
-        if (!event.ctrlKey && event.altKey && !event.shiftKey) {
-            if ('S' == String.fromCharCode(event.keyCode)) {
-                doStuff();
-            }
-        }
-    });
-})();

diff --git a/set e-mail field to HIVfasta@mailinator.com.user.js b/set e-mail field to HIVfasta@mailinator.com.user.js
deleted file mode 100644 (file)
index 37d15de..0000000
--- a/set e-mail field to HIVfasta@mailinator.com.user.js
+++ /dev/null
@@ -1,30 +0,0 @@
-// ==UserScript==
-// @name         set e-mail field to HIVfasta@mailinator.com
-// @namespace    http://dariusz.murakowski.org
-// @version      0.1
-// @description  only sets e-mail field when title matches "Mail-back submission form "
-// @author       Dariusz Murakowski
-// @copyright    2018+, Dariusz Murakowski
-// @license      AGPL-3.0-or-later
-// @match        https://www.hiv.lanl.gov/components/sequence/HIV/search/search.comp
-// @grant        none
-// @run-at       document-end
-// ==/UserScript==
-
-(function() {
-    'use strict';
-
-    function get0(s) {
-        var sel = document.querySelectorAll(s);
-        if (sel.length == 1) {
-            var out = sel[0];
-            console.log(out);
-            return out;
-        }
-    }
-
-    if (document.title.startsWith('Mail-back submission form ')) {
-        get0('input[name=email]').value = 'HIVfasta@mailinator.com';
-        get0('input[name=job_title]').focus();
-    }
-})();